I wasn't super picky about numbering, but alas here's my list of films NOT on the AFI's list.

1. All Quiet on the Western Front (1930 Lewis Milestone)
2. Ordinary People (1980 Robert Redford)
3. The Manchurian Candidate (1962 John Frankenheimer)
4. All That Jazz (1979 Bob Fosse)
5. Mulholland Drive (2001 David Lynch)
6. Before Sunrise (1995 Richard Linklater)
7. Ace in the Hole/The Big Carnival (1951 Billy Wilder)
8. Magnolia (1999 Paul Thomas Anderson)
9. Steamboat Bill Jr. (1928 Buster Keaton)
10. Dances With Wolves (1990 Kevin Costner)

11. They Live By Night (1949 Nicholas Ray)
12. America, America (1963 Elia Kazan)
13. Days of Wine and Roses (1962 Blake Edwards)
14. Natural Born Killers (1994 Oliver Stone)
15. Mean Streets (1973 Martin Scorsese)
16. The Shining (1980 Stanley Kubrick)
17. Airplane (1980 Jim Abrahams, David Zucker, Jerry Zucker)
18. To Have and Have Not (1944 Howard Hawks)
19. Malcolm X (1992 Spike Lee)
20. Johnny Got His Gun (1971 - Dalton Trumbo)

21. Fight Club (1999 David Fincher)
22. White Heat (1949 Raoul Walsh)
23. Meet John Doe (1941 Frank Capra)
24. East of Eden (1955 Elia Kazan)
25. Top Hat (1935 Mark Sandrich)
26. Kiss Me Deadly (1955 Robert Aldrich)
27. LA Confidential (1997 Curtis Hansen)
28. Witness for the Prosecution (1957 Billy Wilder)
29. Interiors (1978 Woody Allen)
30. Blue Velvet (1986 - David Lynch)

31. Last Temptation of Christ (1988 Martin Scorsese)
32. Invasion of the Body Snatchers (1956 Don Spiegel)
33. Kill Bill (2003, 2004 - Quentin Tarantino)
34. Pink Floyds The Wall (1982 Alan Parker)
35. Paths of Glory (1957 Stanley Kubrick)
36. Terminator 2: Judgment Day (1991 - James Cameron)
37. Sin City (2005 Robert Rodriguez, Frank Miller, Quentin Tarantino)
38. Glen or Glenda? (1953 - Edward D. Wood Jr.)
39. The Incredibles (2004 Brad Bird)
40. Bride of Frankenstein (1935 James Whale)

41. Eraserhead (1977 David Lynch)
42. 42nd Street (1933 Lloyd Bacon)
43. Requiem for a Dream (2000 Darren Aronofsky)
44. Point Blank (1967 John Boorman)
45. Planet of the Apes (1968 Franklin J. Schaffner)
46. Once Upon a Time in America (1984 Sergio Leone)
47. Raising Arizona (1987 Joel and Ethan Coen)
48. The Princess Bride (1987 Rob Reiner)
49. Eternal Sunshine of the Spotless Mind (2004 Michel Gondry)
50. Children of Men (2006 - Alfonso Cauron)

51. Salvador (1986 Oliver Stone)
52. Reservoir Dogs (1992 Quentin Tarantino)
53. Brazil (1985 Terry Gilliam)
54. Touch of Evil (1958 Orson Welles)
55. Who Framed Roger Rabbit? (1988 Robert Zemeckis)
56. Rebecca (1940 Alfred Hitchcock)
57. I am a Fugitive From a Chain Gang (1932 Mervyn LeRoy)
58. Dumbo (1941 Wilfred Jackson and company)
59. Design For Living (1933 Ernst Lubitsch)
60. Unfaithfully Yours (1948 Preston Sturges)

61. From Here to Eternity (1953 Fred Zinnemann)
62. Of Mice and Men (1939 - Lewis Milestone)
63. Ruggles of Red Cap (1935 - Leo McCarey)
64. Bigger Than Life (1956 - Nicholas Ray)
65. Dr. Zhivago (1965- David Lean)
66. A Woman Under the Influence (1974 - John Cassavetes)
67. Boogie Nights (1997 - Paul Thomas Anderson)
68. Dazed and Confused (1993 - Richard Linklater)
69. Detective Story (1951 - William Wyler)
70. The Wedding March (1928 - Erich Von Stroheim)

71. Pee-Wee's Big Adventure (1985 - Tim Burton)
72. The Big Heat (1953 - Fritz Lang)
73. The Killing (1956 - Stanley Kubrick)
74. Funny Face (1957 - Stanley Donen)
75. Rosemary's Baby (1968 - Roman Polanski)
76. San Francisco (1936 - W. S. Van Dyke)
77. Libeled Lady (1936 - Jack Conway)
78. The Hill (1965 - Sidney Lumet)
79. Scarface (1932 - Howard Hawks)
80. In a Lonely Place (1950 - Nicholas Ray)

81. Magnificent Ambersons (1942 - Orson Welles)
82. Meet Me In St. Louis (1944 - Vincente Minelli)
83. This is Spinal Tap (1984 - Rob Reiner)
84. When Harry Met Sally (1989 - Rob Reiner)
85. Major League (1989 - David Ward)
86. Dawn of the Dead (1978 - George Romero)
87. Real Life (1979 - Albert Brooks)
88. Diner (1982 - Barry Levinson)
89. The Thing From Another World (1951 - Christian Nyby)
90. Saturday Night Fever (1977 - John Baddam)

91. Groundhog Day (1993 - Harold Ramis)
92. Splendor in the Grass (1961 - Elia Kazan)
93. Seconds (1966 - John Frankenheimer)
94. Trading Places (1983 - John Landis)
95. Big Trouble in Little China (1986 - John Carpenter)
96. Deconstructing Harry (1997 - Woody Allen)
97. The Royal Tenenbaums (2001 - Wes Anderson)
98. Thin Red Line (1998 - Terence Mallick)
99. American Beauty (1990 - Sam Mendes)
100.Elephant (2003 - Gus Van Sant)